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Publication Order of Ship Breaker Books
| Ship Breaker | (2010) | Hardcover  Paperback  Kindle |
| The Drowned Cities | (2012) | Hardcover  Paperback  Kindle |
| Tool of War | (2017) | Hardcover  Paperback  Kindle |
Publication Order of Windup Universe Books
| Pump Six and Other Stories | (2006) | Hardcover  Paperback  Kindle |
| The Windup Girl | (2009) | Hardcover  Paperback  Kindle |
Publication Order of Khaim Short Stories/Novellas
| The Alchemist | (2011) | Hardcover  Paperback  Kindle |
| The Executioness | (2011) | Hardcover  Paperback  Kindle |
| The Tangled Lands | (2018) | Hardcover  Paperback  Kindle |
Publication Order of Standalone Novels
| Zombie Baseball Beatdown | (2013) | Hardcover  Paperback  Kindle |
| The Doubt Factory | (2014) | Hardcover  Paperback  Kindle |
| The Water Knife | (2015) | Hardcover  Paperback  Kindle |
Publication Order of Short Stories/Novellas
| The Fluted Girl | (2003) | Hardcover  Paperback  Kindle |
| The People of Sand and Slag | (2004) | Hardcover  Paperback  Kindle |
| The Calorie Man | (2005) | Hardcover  Paperback  Kindle |
| Yellow Card Man | (2006) | Hardcover  Paperback  Kindle |
| The Gambler | (2008) | Hardcover  Paperback  Kindle |
Publication Order of Apocalypse Triptych Anthology Books
| The End is Nigh | (2014) | Hardcover  Paperback  Kindle |
| The End is Now | (2014) | Hardcover  Paperback  Kindle |
| The End Has Come | (2015) | Hardcover  Paperback  Kindle |
| This is an anthology series written with many authors. | ||
Publication Order of Jonathan Hamilton Books
Publication Order of The Best Science Fiction and Fantasy of the Year Books
| The Best Science Fiction and Fantasy of the Year, Volume 1 | (2007) | Hardcover  Paperback  Kindle |
| The Best Science Fiction and Fantasy of the Year, Volume 2 | (2008) | Hardcover  Paperback  Kindle |
| The Best Science Fiction and Fantasy of the Year, Volume 3 | (2009) | Hardcover  Paperback  Kindle |
| The Best Science Fiction and Fantasy of the Year, Volume 4 | (2010) | Hardcover  Paperback  Kindle |
| The Best Science Fiction and Fantasy of the Year, Volume 5 | (2011) | Hardcover  Paperback  Kindle |
| The Best Science Fiction and Fantasy of the Year, Volume 6 | (2012) | Hardcover  Paperback  Kindle |
| The Best Science Fiction and Fantasy of the Year, Volume 7 | (2012) | Hardcover  Paperback  Kindle |
| The Best Science Fiction and Fantasy of the Year, Volume 8 | (2013) | Hardcover  Paperback  Kindle |
| The Best Science Fiction and Fantasy of the Year, Volume Nine | (2014) | Hardcover  Paperback  Kindle |
| The Best Science Fiction and Fantasy of the Year, Volume 10 | (2015) | Hardcover  Paperback  Kindle |
| The Best Science Fiction and Fantasy of the Year, Volume 11 | (2017) | Hardcover  Paperback  Kindle |
| The Best Science Fiction and Fantasy of the Year, Volume 12 | (2018) | Hardcover  Paperback  Kindle |
| The Best Science Fiction and Fantasy of the Year, Volume 13 | (2019) | Hardcover  Paperback  Kindle |
Publication Order of Anthologies
| The Year’s Best Fantasy and Horror: Seventeenth Annual Collection | (2004) | Hardcover  Paperback  Kindle |
| Asimov’s Science Fiction, September 2004 | (2004) | Hardcover  Paperback  Kindle |
| Asimov’s Science Fiction Magazine, December 2006 | (2006) | Hardcover  Paperback  Kindle |
| Logorrhea: Good Words Make Good Stories | (2007) | Hardcover  Paperback  Kindle |
| Fast Forward 2 | (2008) | Hardcover  Paperback  Kindle |
| I’m With the Bears | (2011) | Hardcover  Paperback  Kindle |
| After the End: Recent Apocalypses | (2013) | Hardcover  Paperback  Kindle |
| The End is Nigh | (2014) | Hardcover  Paperback  Kindle |
| The Best Science Fiction and Fantasy of the Year, Volume Nine | (2014) | Hardcover  Paperback  Kindle |
| Monstrous Affections: An Anthology of Beastly Tales | (2014) | Hardcover  Paperback  Kindle |
| Future Tense Fiction: Stories of Tomorrow | (2016) | Hardcover  Paperback  Kindle |
| The Year’s Best Science Fiction: Thirty-Fourth Annual Collection | (2017) | Hardcover  Paperback  Kindle |